ELIXIR: The Czech Republic Node
We are an open access research infrastructure dedicated to organization, storage, sharing and facilitation of interoperability of life science data for further processing and analysis.
- Zařazení: Zpravodajství a média
We are an open access research infrastructure dedicated to organization, storage, sharing and facilitation of interoperability of life science data for further processing and analysis.
Speaker: Karel Berka from Palacký University OlomoucMOLEonline is an interactive, web-based application for the detection and characterization of channels (pores and tunnels) within biomacromolecular structures. The application enables two modes of calcul
Speaker: Michal Malý from Institute of Biotechnology of the Czech Academy of Sciences The newly developed web interface for the MMB (MacroMoleculeBuilder) program will be presented. It concentrates on user-friendly building of initial models and modificat
Speaker: Radka Svobodová from Masaryk UniversityPartial atomic charges serve as a simple model for the electrostatic distribution of a molecule that drives its interactions with its surroundings. Since partial atomic charges are frequently used in computa
Speaker: Petr Novák from Biology Centre of the Czech Academy of SciencesRepeatExplorer Galaxy Server provides several tools for discovering and annotation of repetitive elements. Most notably, these include tools such as RepeatExplorer2 or TAREAN pipeline
Speaker: Ansgar Gruber from University of South Bohemia in České Budějovice and Biology Centre of the CASPlastids of diatoms and related algae with complex plastids of red algal origin, are surrounded by four membranes, which also define the periplastidic
The sixth ELIXIR CZ annual conference.After more than a year of meeting on Zoom, we are warmly inviting you to the ELIXIR CZ Annual Conference 2021 to get together and discuss progress in ELIXIR CZ in-person.We would be delighted to have you at this confe
After the summer break, the series of webinars introducing our services is back. Learn about tools and databases developed by ELIXIR CZ, which have great potential to help you in your daily research work. Every Friday at 9:30am, you can have a closer look
Speaker: Martin Modrák from the Institute of Microbiology of the Czech Academy of SciencesSimulation studies are an important part of validation for any statistical tool. In the context of Bayesian models, there are consistency results that can be used to
Approximation of collective variables by neural networks AnncolvarVojtech Spiwok from UCTMany methods have been developed to accelerate molecular dynamics simulations. Some of these methods are based on artificial forces applied on certain descriptors of
PhyloFisher: A phylogenomic package for resolving eukaryotic relationshipsMartin Kolisko, Matthew W Brown from BC, JUMeet us online every friday morning to explore the portfolio of ELIXIR CZ tools and services at https://global.gotomeeting.com/join/508817
OpenPonk: an Open Conceptual Modelling PlatformRobert Pergl, Jan Blizničenko from CTUOpenPonk is an open platform for conceptual modelling. It offers several notations for structural and behavioural modelling, but most importantly, it is open for extendin
It is with great sadness that we announce the passing of a distinguished figure of Czech science and structural biology, Jaroslav Koča. ELIXIR CZ lost not only its chairman of the Board, but a great colleague.Jaroslav Koča taught at universities in the US
According to the Horizon Europe Programme Guide, DSW is one of the recommended tool for developing DMPs: The DMPONLINE tool (supports the development of project DMPs); ARGOS (online tool); the Data Stewardship Wizard, a joint ELIXIR CZ and ELIXIR NL tool,
PrankWebMarian Novotný from UKPrankWeb (https://prankweb.cz/) is a tool predicting ligand binding sites on 3D structures using machine learning algorithms. The tool is integrated into the PDBe-KB. We will present both its current state and its future deve
CaverDock: Analysis of Ligand Transport through Protein TunnelsOndřej Vávra from ICRCUnderstanding protein-ligand interactions is crucial for drug design and enzyme engineering. The interaction of protein and small ligand molecule often takes place in pro